I wouldn't say that, anime adaptions in general are a different bit than American cartoons are; as they have to more or less follow the manga (either looser or tighter adaptions depending on the product) so even if a director or animator is male, it's still the female's story being told. I'd like to think Sailor Moon is a rare case of a mangaka being upset with the work (if it's true) as I know Hiromu Arakawa, who wrote Fullmetal Alchemist, had a creative hand in the anime and was often at the studio and staff meatings working with them (for both the new and the older series), and even helped write the upcoming movie.
Now if you look only at original anime works which are not based on manga, then maybe it'd be a different story. I'd say Japan is far better off for a women looking to break it into the comic/animation industry just going by some of the charts and information I've seen.
[link]It's extremely one sided at this stage, though, but maybe it'll change one day.