Okay say an enemy faction has uploaded a viruse that causes them to revolt
We'll assume that the virus is deployed during production and affects both the cybernetic and organic portions of the cyborg's brain.
What happens is that those cyborgs that are produced with the virus are discovered during the final checks [something akin to a medical check up and mechanical tuning rolled into one] before deployment. These are promptly destroyed and production comes to a halt until the problem can be fixed.
If they make it past the final check up, those that were produced will turn against their masters. When they turn, production is halted and those that revolted are un-alived. Production resumes again when the problem has been fixed.
At worst a couple dozen cyborgs revolt and production ends up halted for a day or two.
What happens is that those cyborgs that are produced with the virus are discovered during the final checks [something akin to a medical check up and mechanical tuning rolled into one] before deployment. These are promptly destroyed and production comes to a halt until the problem can be fixed.
If they make it past the final check up, those that were produced will turn against their masters. When they turn, production is halted and those that revolted are un-alived. Production resumes again when the problem has been fixed.
At worst a couple dozen cyborgs revolt and production ends up halted for a day or two.